API to access Anatomist with python scripts.
Includes Anatomist C++ API bindings.
- See the Sphinx documentation
- Enables two means of communication with Anatomist application : exchanging messages on socket or using C++ API bindings
- Allows access to Anatomist API and manipulation of Anatomist objects and state from python scripts and shells
- Allows to write Anatomist plugins in python
See the programming part of Anatomist tutorial.
To execute these examples, use "ipython -q4thread" (They need that a QT event loop is running). And then, "%run <example>.py.
See the examples in the following order:
- volumetest.py: loading and viewing a Volume with anatomist
- aimsvolumetest.py: loading, handling and viewing a Volume with aims and anatomist
- meshtest.py: using a mesh and modifying it while it is displayed
- customcommands.py: using the commands interpreter in a generic way
- fusion3D.py: merging a volume and mesh in a 3D fusion object.
- graph.py: loading and displaying a graph
- events.py: catching click events and plugging a callback
- selection.py: getting selected objects
- nomenclatureselection.py: selecting graph nodes according a nomenclature
- anatomistapiTests.py: most of anatomistapi module's features
- sphere.py: subclassing Anatomist objects
- ellipsoid.py: Updating the size and shape of an object interactively.
- control.py: plugging new conrols / actions in Anatomist views
- addMenuEntry.py: customizing object-specific menus
- fusion.py: registering new fusion types
- customopenglobject.py: customizing OpenGl parameters for objects.
- texturedrawing.py: drawing ROI on a mesh in a texture.
- volumeMeasures.py: Complete example with a specific graphical interface that embeds an Anatomist window and a matplot lib widget. Shows a 4D volume and a curve of the values in a selected voxel or the mean of values in a selected region.
- anaevensimplerviewer.py, which is as its name says, an even simplified of the anasimpleviewer application, which may also be used as a programming example. Its code is in the "bin/"" directory of the binary packages.
- bvProcessSocket.py: Brainvisa process using anatomist API socket implementation
