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Publications of year 2011

Articles in journal or book chapters

  1. L. Chaâri, J.-C. Pesquet, A. Benazza-Benyahia, and P. Ciuciu. A wavelet-based regularized reconstruction algorithm for SENSE parallel MRI with applications to neuroimaging. Medical Image Analysis, 15(2):185-201, 2011. Keyword(s): wavelet, parallel MRI, reconstruction, sparsity, brainvisa, IFR49. 
    @article{chaari10c,
author = {L. Chaâri and J.-C. Pesquet and A. Benazza-Benyahia and P. Ciuciu},
title = {A wavelet-based regularized reconstruction algorithm for {SENSE parallel MRI} with applications to neuroimaging},
journal = {Medical Image Analysis},
year = 2011,
volume = 15,
number = 2,
pages = {185--201},
keywords = {wavelet, parallel MRI, reconstruction, sparsity,brainvisa, IFR49} 
}


  2. C. Leroy, L. Karila, J.-L. Martinot, M. Lukasiewicz, E. Duchesnay, C. Comtat, F. Dollé, A. Benyamina, E. Artiges, M.-J. Ribeiro, M. Reynaud, and C. Trichard. Striatal and extrastriatal dopamine transporter in cannabis and tobacco addiction: a high-resolution PET study. Addiction Biology, 2011. Keyword(s): IFR49, U1000, brainvisa. 
    @article{LeroyC11,
author = {Leroy, C. and Karila, L. and Martinot, J.-L. and Lukasiewicz, M. and Duchesnay, E. and Comtat, C. and Dollé, F. and Benyamina, A. and Artiges, E. and Ribeiro, M.-J. and Reynaud, M. and Trichard, C.},
title = {Striatal and extrastriatal dopamine transporter in cannabis and tobacco addiction: a high-resolution PET study },
journal = {Addiction Biology},
year = 2011,
doi = {10.1111/j.1369-1600.2011.00356.x},
keywords = { IFR49, U1000, brainvisa} 
}


  3. M. Perrot, D. Rivière, and J.-F. Mangin. Cortical sulci recognition and spatial normalization. Medical Image Analysis, 15(4):529-550, 2011. Keyword(s): sulci, SPAM, brainvisa, IFR49. 
    @article{perrot11,
author = {M. Perrot and D. Rivière and J.-F. Mangin},
title = {Cortical sulci recognition and spatial normalization},
journal = {Medical Image Analysis},
year = 2011,
volume = 15,
number = 4,
pages = {529--550},
keywords = {sulci, SPAM, brainvisa, IFR49},
pdf = {ftp://static.lnao.fr/lnao/static/papers/perrot_matthieu_media2011_preprint.pdf} 
}


  4. J. Régis, M. Tamura, M. Park, A. McGonigal, D. Rivière, O. Coulon, F. Bartolomei, N. Girard, D. Figarella-Branger, P. Chauvel, and J.-F. Mangin. Subclinical abnormal gyration pattern, a potential anatomic marker of epileptogenic zone in patients with MRI–negative frontal lobe epilepsy. Neurosurgery, 69(1):80-94, 2011. Keyword(s): Sulci, brainvisa, IFR49. 
    @article{regis11,
author = {J. Régis and M. Tamura and M. Park and A. McGonigal and D. Rivière and O. Coulon and F. Bartolomei and N. Girard and D. Figarella-Branger and P. Chauvel and J.-F. Mangin},
title = {Subclinical abnormal gyration pattern, a potential anatomic marker of epileptogenic zone in patients with {MRI–negative} frontal lobe epilepsy},
journal = {Neurosurgery},
year = 2011,
volume = 69,
number = 1,
pages = {80--94},
keywords = {Sulci, brainvisa, IFR49} 
}


Conference articles

  1. L. Chaâri, F. Forbes, P. Ciuciu, T. Vincent, and M. Dojat. Bayesian variational approximation for the joint Detection-Estimation of brain activity in fMRI. In IEEE Workshop on Statistical Signal Processing (SSP 2011), Nice, France, June 2011. Keyword(s): brainvisa, IFR49. 
    @inproceedings{chaari11b,
author = {L. Chaâri and F. Forbes and P. Ciuciu and T. Vincent and M. Dojat},
title = {{Bayesian} variational approximation for the joint Detection-Estimation of brain activity in {fMRI}},
booktitle = {{IEEE Workshop on Statistical Signal Processing (SSP 2011)}},
year = 2011,
address = {Nice, France},
month = {June},
keywords = {brainvisa, IFR49} 
}


  2. L. Chaâri, J.-C. Pesquet, J.-Y. Tourneret, and P. Ciuciu. Parameter estimation for hybrid wavelet Total Variation regularization. In IEEE Workshop on Statistical Signal Processing (SSP 2011), Nice, France, June 2011. Keyword(s): brainvisa, IFR49. 
    @inproceedings{chaari11c,
author = {L. Chaâri and J.-C. Pesquet and Tourneret, J.-Y. and P. Ciuciu},
title = {Parameter estimation for hybrid wavelet {Total Variation} regularization},
booktitle = {{IEEE Workshop on Statistical Signal Processing (SSP 2011)}},
year = 2011,
address = {Nice, France},
month = {June},
keywords = {brainvisa, IFR49} 
}


  3. D. Geffroy, D. Rivière, I. Denghien, N. Souedet, S. Laguitton, and Y. Cointepas. BrainVISA: a complete software platform for neuroimaging. In Python in Neuroscience workshop, Paris, Aug. 2011. Keyword(s): brainvisa, IFR49. 
    @conference{geffroy11,
author = {D. Geffroy and D. Rivière and I. Denghien and N. Souedet and S. Laguitton and Y. Cointepas},
title = {BrainVISA: a complete software platform for neuroimaging},
booktitle = {Python in Neuroscience workshop},
year = 2011,
address = {Paris},
month = {Aug.},
keywords = {brainvisa, IFR49},
pdf = {ftp://static.lnao.fr/lnao/static/papers/brainvisa_python_neuroscience.pdf} 
}


  4. S. Laguitton, D. Rivière, D. Geffroy, N. Souedet, and Y. Cointepas. Soma-Workflow: open source software for easy access to parallel computing resources. In Proc. 17th HBM, 2011. Keyword(s): parallel computing, brainvisa, IFR49. 
    @conference{laguitton11a,
author = {S. Laguitton and D. Rivière and D. Geffroy and N. Souedet and Y. Cointepas},
title = {Soma-Workflow: open source software for easy access to parallel computing resources},
booktitle = {{P}roc. 17th {{HBM}}},
year = 2011,
keywords = {parallel computing, brainvisa, IFR49} 
}


  5. S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, I. Denghien, and Y. Cointepas. Soma-workflow: a unified and simple interface to parallel computing resources. In MICCAI Workshop on High Performance and Distributed Computing for Medical Imaging, Toronto, Sep. 2011. Keyword(s): parallel computing, brainvisa, IFR49. 
    @inproceedings{laguitton11b,
author = {S. Laguitton and D. Rivière and T. Vincent and C. Fischer and D. Geffroy and N. Souedet and I. Denghien and Y. Cointepas},
title = {Soma-workflow: a unified and simple interface to parallel computing resources},
booktitle = {MICCAI Workshop on High Performance and Distributed Computing for Medical Imaging},
year = 2011,
address = {Toronto},
month = {Sep.},
keywords = {parallel computing, brainvisa, IFR49},
pdf = {ftp://static.brainvisa.info/brainvisa/static/soma-workflow/MICCAI_2011_soma_workflow.pdf} 
}


  6. S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, I. Denghien, and Y. Cointepas. Soma-workflow: a unified and simple interface to parallel computing resources. In Python in Neuroscience workshop, Paris, Aug. 2011. Keyword(s): parallel computing, brainvisa, IFR49. 
    @inproceedings{laguitton11c,
author = {S. Laguitton and D. Rivière and T. Vincent and C. Fischer and D. Geffroy and N. Souedet and I. Denghien and Y. Cointepas},
title = {Soma-workflow: a unified and simple interface to parallel computing resources},
booktitle = {Python in Neuroscience workshop},
year = 2011,
address = {Paris},
month = {Aug.},
keywords = {parallel computing, brainvisa, IFR49},
pdf = {ftp://static.brainvisa.info/brainvisa/static/soma-workflow/python_neuroscience_soma_workflow.pdf} 
}


  7. D. Rivière, B. Bernhardt, H. Kim, S.-J. Hong, M. Perrot, J.-F. Mangin, J. Régis, N. Bernasconi, and A. Bernasconi. Focal epileptogenic malformations of cortical development are associated with diffuse sulcal anomalies. In Proc. 17th HBM, 2011. Keyword(s): brainvisa, Sulci, Anatomy, IFR49. 
    @conference{riviere11a,
author = {D. Rivière and B. Bernhardt and H. Kim and S.-J. Hong and M. Perrot and J.-F. Mangin and J. Régis and N. Bernasconi and A. Bernasconi},
title = {Focal epileptogenic malformations of cortical development are associated with diffuse sulcal anomalies},
booktitle = {{P}roc. 17th {{HBM}}},
year = 2011,
keywords = {brainvisa, Sulci, Anatomy, IFR49},
pdf = {ftp://static.lnao.fr/lnao/static/papers/riviere-hbm11.pdf} 
}


  8. D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and Y. Cointepas. Anatomist: a python framework for interactive 3D visualization of neuroimaging data. In Python in Neuroscience workshop, 2011. Keyword(s): brainvisa, IFR49. 
    @conference{riviere11b,
author = {D. Rivière and D. Geffroy and I. Denghien and N. Souedet and Y. Cointepas},
title = {Anatomist: a python framework for interactive 3D visualization of neuroimaging data},
booktitle = {Python in Neuroscience workshop},
year = 2011,
keywords = {brainvisa, IFR49},
pdf = {ftp://static.lnao.fr/lnao/static/papers/riviere-neuroscipy11.pdf} 
}


  9. G. Varoquaux, A. Gramfort, F. Pedregosa, M. Vincent, and B. Thirion. Multi-subject dictionary learning to segment an atlas of brain spontaneous activity. In Proc. 22th IPMI, LNCS-, Monastery IrseeGermany, pages -, July 2011. Springer Verlag. Keyword(s): brainvisa, IFR49. 
    @inproceedings{varoquaux11,
author = {Varoquaux, G. and Gramfort, A. and Pedregosa, F. and Vincent, M. and B. Thirion},
title = {Multi-subject dictionary learning to segment an atlas of brain spontaneous activity},
booktitle = {{P}roc. 22th {{IPMI}}},
year = 2011,
series = {LNCS-},
pages = {--},
address = {Monastery IrseeGermany},
month = {July},
publisher = {Springer Verlag},
keywords = {brainvisa, IFR49} 
}



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