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Conference articles

2011

  1. L. Chaâri, F. Forbes, P. Ciuciu, T. Vincent, and M. Dojat. Bayesian variational approximation for the joint Detection-Estimation of brain activity in fMRI. In IEEE Workshop on Statistical Signal Processing (SSP 2011), Nice, France, June 2011. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  2. L. Chaâri, J.-C. Pesquet, J.-Y. Tourneret, and P. Ciuciu. Parameter estimation for hybrid wavelet Total Variation regularization. In IEEE Workshop on Statistical Signal Processing (SSP 2011), Nice, France, June 2011. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  3. D. Geffroy, D. Rivière, I. Denghien, N. Souedet, S. Laguitton, and Y. Cointepas. BrainVISA: a complete software platform for neuroimaging. In Python in Neuroscience workshop, Paris, Aug. 2011. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  4. S. Laguitton, D. Rivière, D. Geffroy, N. Souedet, and Y. Cointepas. Soma-Workflow: open source software for easy access to parallel computing resources. In Proc. 17th HBM, 2011. Keyword(s): parallel computing, brainvisa, IFR49. [bibtex-entry]


2010

  1. S. Badillo, S. Desmidt, and P. Ciuciu. A group level fMRI comparative study between 12 and 32 channel coils at 3 Tesla. In D Le Bihan, editor, 16thProc. HBM'10, Barcelona, Espania, June 2010. Elsevier. Keyword(s): parallel MRI, SENSE, coil comparison, brainvisa, IFR49. [bibtex-entry]


  2. L. Chaâri, S. Mériaux, J.-C. Pesquet, and P. Ciuciu. Impact of the parallel imaging reconstruction algorithm on brain activity detection in fMRI. In IEEE ISABEL'10 Symposium, Roma, Italia, Nov. 2010. Keyword(s): wavelet, parallel MRI, reconstruction, sparsity, brainvisa, IFR49. [bibtex-entry]


  3. L. Chaâri, S. Mériaux, J.-C. Pesquet, and P. Ciuciu. Impact of the parallel imaging reconstruction algorithm on the statistical sensitivity in fMRI. In D Le Bihan, editor, 16thProc. HBM'10, Barcelona, Espania, June 2010. Elsevier. Keyword(s): wavelet, parallel MRI, reconstruction, sparsity, brainvisa, IFR49. [bibtex-entry]


  4. L. Chaâri, J.-C. Pesquet, Amel Benazza-Benyahia, and P. Ciuciu. A hierarchical Bayesian model for frame representation. In 35th Proc. IEEE ICASSP, Dallas, TX, USA, pages 4086-4089, Mar. 2010. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  5. P. Ciuciu, S. Desmidt, T. Vincent, S. Roger, B. Thirion, and A. Roche. What is the statistical difference between SPM5 and the BrainVISA fMRI toolbox?. In D Le Bihan, editor, 16thProc. HBM'10, Barcelona, Espania, June 2010. Elsevier. Keyword(s): parallel MRI, SENSE, coil comparison, brainvisa, IFR49. [bibtex-entry]


  6. Y. Cointepas, D. Geffroy, N. Souedet, I. Denghien, and D. Rivière. The BrainVISA project: a shared software development infrastructure for biomedical imaging research. In Proc. 16th HBM, 2010. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  7. T. Vincent, A. Tucholka, and P. Ciuciu. Surface-based joint detection-estimation of brain activity in functional MRI. In D Le Bihan, editor, 16thProc. HBM'10, Barcelona, Espania, June 2010. Elsevier. Keyword(s): JDE, HRF, Bayesian, MCMC, cortical surface, brainvisa, IFR49. [bibtex-entry]


2009

  1. P. Ciuciu, S. Sockeel, T. Vincent, and J. Idier. Modelling the neurovascular habituation effect on fMRI time series. In 34th Proc. IEEE ICASSP, Taipei, Taiwan, pages 433-436, Apr. 2009. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  2. L. Favre, A.-L. Fouque, T. Vincent, A. Tucholka, M. Keller, G. Operto, B. Thyreau, C. Clouchoux, L. Risser, A. Moreno, D. Geffroy, Y. Cointepas, O. Coulon, P. Ciuciu, B. Thirion, and A. Roche. A Comprehensive fMRI Processing Toolbox for BrainVISA. In Hum. Brain Mapp., 2009. Keyword(s): brainvisa, fMRI, IFR49. [bibtex-entry]


  3. A.-L. Fouque, P. Ciuciu, and L. Risser. Multivariate spatial Gaussian mixture modeling for statistical clustering of hemodynamic parameters in functional MRI. In 34th Proc. IEEE ICASSP, Taipei, Taiwan, pages 445-448, Apr. 2009. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  4. L. Risser, J. Idier, and P. Ciuciu. Bilinear extrapolation scheme For Fast Estimation of 3D Ising Field Partition Function. Application to fMRI Time Course Analysis.. In 16th Proc. IEEE ICIP, Cairo, Egypt, pages 833-836, Nov. 2009. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  5. L. Risser, T. Vincent, and P. Ciuciu. Schéma d'extrapolation de fonctions de partition de champs de Potts. Application l'analyse d'images en IRMf. In Actes du 22$^{\mathrm{e}}$ colloque GRETSI, Dijon, France, Sep. 2009. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  6. T. Vincent, L. Risser, P. Ciuciu, and J. Idier. Spatially unsupervised analysis of within-subject fMRI data using multiple extrapolations of 3D Ising field partition functions. In 2009 IEEE international workshop on Machine Learning for Signal Processing, Grenoble, France, Sep. 2009. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  7. T. Vincent, L. Risser, J. Idier, and P. Ciuciu. Spatially adaptive mixture modelling for analysis of fMRI time series. In Proc. 15th HBM, San Francisco, CA, USA, June 2009. Keyword(s): brainvisa, IFR49. [bibtex-entry]


2008

  1. E. Brunet-Gouet, D. Vistoli, E. Bobin, and C. Passerieux. MEG-EEG correlates of mentalistic and mechanical reasoning in healthy subjects. An analysis of the effects of incongruity. In 14th Human Brain Mapping (OHBM), Melbourne, Australia, June 2008. Keyword(s): brainvisa, meeg. [bibtex-entry]


  2. M. Chupin, G. Chételat, L. Lemieux, B. Dubois, L. Garnero, H. Benali, F. Eustache, S. Lehéricy, B. Desgranges, and O. Colliot. Fully Automatic Hippocampus Segmentation Discriminates between Early Alzheimer's Disease and Normal Aging. In Proc. IEEE ISBI, pages 97-100, 2008. Keyword(s): IFR49, brainvisa, UPR 640, CENIR, U610, U678, UPMC. [bibtex-entry]


  3. M. Chupin, R. Cuingnet, L. Lemieux, S. Lehéricy, H. Benali, L. Garnero, and O. Colliot. Fully Automatic Hippocampus Segmentation Discriminates between Alzheimer's Disease and Normal Aging - Data from the ADNI database. In MICCAI, Computational Anatomy and Physiology of the Hippocampus Workshop, 2008. Keyword(s): IFR49, brainvisa, UPR 640, CENIR, U678. [bibtex-entry]


  4. P. Ciuciu, T. Vincent, A.-L. Fouque, and A. Roche. Improved fMRI group studies based on spatially varying non-parametric BOLD signal modeling. In 5th Proc. IEEE ISBI, Paris, France, pages 1263-1266, May 2008. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  5. M. Cykowski, O. Coulon, P. Kochunov, J. Lancaster, and P. Fox. The postcentral sulcus: depth profiles in sulci grouped by cluster analysis. In 14th Human brain Mapping (OHBM), Melbourne, Australia, 2008. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  6. A. Dubois, J. Dauguet, N. Souedet, A. S. Hérard, D. Rivière, Y. Cointepas, G. Bonvento, P. Hantraye, and T. Delzescaux. BrainRAT: Brain Reconstruction and Analysis Toolbox. a freely available toolbox for the 3D reconstruction of anatomo-functional brain sections in rodents. In 38th annual meeting of the Society for Neuroscience, Washington, 2008. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  7. S. Fernandez Vidal, E. Bardinet, M. Bhattacharjee, D. Dormont, C. Karachi, and J. Yelnik. A brainvisa/anatomist visualisation and processing toolbox for deep brain electrode implantation under stereotactic conditions. In CARS 2008, Barcelona, 2008. Keyword(s): IFR49, brainvisa, stereotaxy, UPR 640, U679, Pitié-Salpêtrière, CENIR. [bibtex-entry]


  8. H.Chouk and M.A. Amorin. Les Signatures Neurocognitives du Changement de Point de Vue pour la Reconnaissance des Objets 3D. In 2ème Conférence française de neurosciences computationnelles Neurocomp08, 2008. Keyword(s): brainvisa, meeg. [bibtex-entry]


  9. J. Harwell, H. Bremen, O. Coulon, D. Dierker, R.C. Reynolds, C. Silva, K. Teich, D.C. Van Essen, S.K. Warfield, and Z.S. Saad. GIFTI: Geometry data format for exchange of surface-based brain mapping data. In 14th Human brain Mapping (OHBM), Melbourne, Australia, 2008. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  10. P. Kochunov, D. Glahn, P. Fox, O. Coulon, K. Zilles, w. Shelledy, J. Lancaster, J. Blangero, and J. Rogers. Genetics of cerebral sulcation: does genetics offer a new way of sulcal classification ?. In 14th Human brain Mapping (OHBM), Melbourne, Australia, 2008. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  11. R. Maroy, M. Santiago-Ribeiro, P. Delonlay, F. Brunelle, C. Nihoul-Fékété, B. Tavitian, and R. Trébossen. Automated segmentation for the distinction between forms of hyperinsulinism. In Proc. of European Association of Nuclear Medicine congress, Munich, Germany, 2008. Keyword(s): IFR49, brainvisa, nuclear imaging, CEA SHFJ. [bibtex-entry]


  12. R. Maroy, T. Viel, R. Boisgard, C. Comtat, R. Trébossen, and B. Tavitian. Fast and Accurate PET Preclinical Data Analysis: Segmentation and Partial Volume Effect Correction with no Anatomical priors. In Proc. NSS/MIC, Dresden, Germany, pages 5498-5501, Oct. 2008. Keyword(s): IFR49, brainvisa, nuclear imaging, CEA SHFJ. [bibtex-entry]


  13. G. Operto, C. Clouchoux, R. Bulot, J.-L. Anton, and O. Coulon. Surface-based structural group analysis of fMRI data. In MICCAI, volume 5241, New York, USA, pages 959-966, 2008. Springer-Verlag. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  14. Z. Y. Sun, D. Rivière, and E. Duchesnay, B. Thirion, F. Poupon, and J.-F. Mangin. Defining cortical sulcus patterns using partial clustering based on bootstrap and bagging. In 5th Proc. IEEE ISBI, Paris, France, pages 1629-1632, May 2008. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  15. T. Vincent, P. Ciuciu, and B. Thirion. Sensitivity analysis of parcellation in the joint detection-estimation of brain activity in fMRI. In 5th Proc. IEEE ISBI, Paris, France, pages 568-571, May 2008. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  16. D. Vistoli, E. Brunet-Gouet, E. Bobin, C. Passerieux, and M.C. Hardy-Baylé. MEG investigation of intention attribution using a non verbal task: a preliminary study. In 38th Neurosciences Congress (SfN), Washington, November 2008. Keyword(s): brainvisa, meeg. [bibtex-entry]


2007

  1. M. Chupin, A. Hammers, E. Bardinet, O. Colliot, R.S.N. Liu, J.S. Duncan, L. Garnero, and L. Lemieux. Fully Automatic Segmentation of the Hippocampus and the Amygdala from MRI Using Hybrid Prior Knowledge. In MICCAI, 2007. Keyword(s): IFR49, brainvisa, UPR 640, CENIR. [bibtex-entry]


  2. M. Cykowski, O. Coulon, P. Kochunov, and P. Fox. Central sulcus depth profiles following automated sulcal recognition and parameterization. In 13th Human Brain Mapping (OHBM), Chicago, USA, 2007. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  3. M. Cykowski, O. Coulon, P. Kochunov, R. Ingham, J. Ingham, and P. Fox. The primary sensorimotor cortex of adults who stutter: evidence for atypical organization detected through automated central sulcus parameterization. In 13th Human Brain Mapping (OHBM), Chicago, USA, 2007. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  4. P. Kochunov, J. Lancaster, S. Narayana, G. Operto, O. Coulon, J.F. Mangin, and P. Fox. Relationship between regional FDG uptake and other markers of cerebral health in normal aging. In Hum. Brain Mapp., Chicago, USA, 2007. Keyword(s): brainvisa, cortical_surface, IFR49. [bibtex-entry]


  5. P. Kochunov, J. Rogers, D. Glahn, J. Lancaster, O. Coulon, J.F. Mangin, D. Rivière, J. Blangero, and P. Fox. Genetic analysis of cerebral volume and cortical sulci in baboons. In Hum. Brain Mapp., Chicago, USA, 2007. Keyword(s): brainvisa, cortical_surface, IFR49. [bibtex-entry]


  6. J.-F. Mangin, V. El Kouby, P. Guevara, M. Perrin, P. Cathier, Y. Cointepas, and C. Poupon. The structural paradigm when analyzing diffusion data. In the SNDS bi-national workshop on “MRI of brain connectivity and microstructure: measurement and validation”, Dead Sea, Israel, 2007. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  7. C. Poupon, F. Poupon, A. Roche, Y. Cointepas, J. Dubois, and J.-F. Mangin. Real-time MR diffusion tensor and Q-ball imaging using Kalman filtering. In 10th Proc. MICCAI, LNCS Springer Verlag, pages 27-35, 2007. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  8. Z. Y. Sun, D. Rivière, F. Poupon, J. Régis, and J.-F. Mangin. Automatic inference of sulcus patterns using 3D moment invariants. In 10th Proc. MICCAI, LNCS Springer Verlag, pages 515-22, 2007. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  9. T. Vincent, P. Ciuciu, and J. Idier. Application and validation of spatial mixture modelling for the joint detection-estimation of brain activity in fMRI. In Proc. of the 29th IEEE EMBS Annual international conference, Lyon , France, pages 5218-5222, Aug. 2007. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  10. T. Vincent, P. Ciuciu, and J. Idier. Spatial mixture modelling for the joint detection-estimation of brain activity in fMRI. In 32th Proc. IEEE ICASSP, volume I, Honolulu, Hawaii, pages 325-328, Apr. 2007. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  11. D. Vistoli, E. Brunet, B. Houzé, and M.C. Hardy-Baylé. MEG investigation of abnormal semantic priming in schizophrenia. In 15th International Congress of Psychiatry (EPA), Madrid, Mar. 2007. Keyword(s): brainvisa, meeg. [bibtex-entry]


  12. D. Vistoli, E. Brunet-Gouet, G. Lakimova, M.C. Hardy-Baylé, and C. Passerieux. A MEG-EEG investigation of the distinct contributions of frontal and temporal regions to the N400 effect. In 13th Human Brain Mapping (OHBM), Chicago, June 2007. Keyword(s): brainvisa, meeg. [bibtex-entry]


2006

  1. A. Barbot, D. P. Schwartz, K. N'Diaye, A. Bellio, J. Mattout, M. Pélégrini, Y. Cointepas, D. Rivière, and A. Ducorps. A MEG/EEG analysis toolbox for BrainVISA. In Hum. Brain Mapp., Florence, 2006. Keyword(s): brainvisa, meeg, IFR49. [bibtex-entry]


  2. M. Chupin, D. Hasboun, A.R. Mukuna Bantumbakulu, E. Bardinet, S. Baillet, S. Kinkingnéhun, L. Lemieux, B. Dubois, and L. Garnero. Competitive Segmentation of the Hippocampus and the Amygdala from MRI Data: Validation on Young Healthy Controls and Alzheimer's Disease Patients. In SPIE Medical Imaging, volume 6144, 2006. Keyword(s): IFR49, brainvisa, UPR 640, CENIR, U610. [bibtex-entry]


  3. C. Clouchoux, O. Coulon, J.-L Anton, and J.-F. Mangin, and J. Régis. A new cortical surface parcellation model and its automatic implementation. In Proc. 9th MICCAI, LNCS 4191, Copenhaegen, Denmark, pages 193-200, Oct. 2006. Springer Verlag. Keyword(s): brainvisa, cortical_surface, IFR49. [bibtex-entry]


  4. C. Clouchoux, O. Coulon, G. Operto, D. Rivière, K. Dauchot, A. Sirigu, and J.L. Anton. Cortical localization via hemisphere surface parameterization. In Human Brain Mapping, Florence, Italy, 2006. Keyword(s): brainvisa, cortical_surface, IFR49. [bibtex-entry]


  5. O. Coulon, C. Clouchoux, G. Operto, K. Dauchot, A. Sirigu, and J.L. Anton. Cortical localization via surface parametrization : a sulcus-based approach. In 12th Human Brain Mapping (OHBM), Florence, Italy, 2006. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  6. H. Gurden, F. Pain, M. Guillermier, A. Dubois, T. Delzescaux, A. Desbrée, R. Mastrippolito, P. Hantraye, G. Bonvento, and P. Lanièce. Metabolic and vascular changes induced in mice olfactory glomeruli by odor presentation. In Forum of European Neuroscience, Vienna, Austria, 2006. Keyword(s): IFR49, brainvisa, CEA MIRCen, BrainRAT. [bibtex-entry]


  7. G. Operto, R. Bulot, J.-L. Anton, and O. Coulon. Anatomically informed convolution kernels for the projection of fMRI data on the cortical surface. In MICCAI, volume 4191, Copenhaguen, Denmark, pages 300-307, 2006. Springer-Verlag. Keyword(s): IFR49, brainvisa, cortical_surface, U797, U610, LSIS. [bibtex-entry]


  8. G. Operto, C. Clouchoux, J.L. Anton, A. Cachia, K. Dauchot, A. Sirigu, R. Bulot, and O. Coulon. Cortical localization via surface parametrization : a gyrus-based approach. In 12th Human Brain Mapping (OHBM), Florence, Italy, 2006. Keyword(s): brainvisa, cortical_surface. [bibtex-entry]


  9. C. Rabrait, P. Ciuciu, C. Poupon, D. Le Bihan, and F. Lethimonnier. Temporal analysis of the BOLD response using high temporal resolution Echo Volumar Imaging. In Proc. 14th ISMRM, May 2006. Keyword(s): brainvisa, IFR49. [bibtex-entry]


2005

  1. C. Clouchoux, O. Coulon, D. Rivière, A. Cachia, J.-F. Mangin, and J. Régis. Anatomically constrained surface parameterization for cortical localization. In MICCAI'05, pages 344-351, 2005. Keyword(s): Sulci, LongConfPaper, brainvisa, cortical_surface, IFR49. [bibtex-entry]


  2. G. Douaud, C. Poupon, Y. Cointepas, J.-F. Mangin, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A.-C. Bachoud-Lévi, P. Hantraye, and P. Remy. Diffusion tensor imaging (DTI) in Huntington's disease patients: analyses of fractional anisotropy (FA) maps and apparent diffusion coefficient (ADC) maps. In ISMRM Workshop on Methods for Quantitative Diffusion MRI of Human Brain, Lake Louise, Canada, 2005. Keyword(s): Diffusion, brainvisa, IFR49. [bibtex-entry]


  3. G. Douaud, C. Poupon, Y. Cointepas, J.-F. Mangin, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A.-C. Bachoud-Lévi, P. Hantraye, and P. Remy. Diffusion tensor imaging (DTI) in Huntington's disease patients: analyses of fractional anisotropy (FA) maps and apparent diffusion coefficient (ADC) maps. In Proc. 11th HBM CD-Rom Neuroimage vol 26 (1), Toronto, Canada, 2005. Keyword(s): Diffusion, Anatomy, brainvisa, IFR49. [bibtex-entry]


  4. G. Douaud, C. Poupon, Y. Cointepas, J.-F. Mangin, V. Gaura, N. Golestani, P. Krystkowiak, C. Verny, P. Damier, A.-C. Bachoud-Lévi, P. Hantraye, and P. Remy. Diffusion tensor imaging in patients with early Huntington's disease reveals frontal and striatal abnormalities. In 57th Annual Meeting of the American Academy of Neurology, 2005. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  5. V. El Kouby, Y. Cointepas, C. Poupon, J.-B. Poline, and J.-F. Mangin. Main fiber tracks detection through classification of MR diffusion imaging data. In Proc. 11th HBM CD-Rom Neuroimage vol 26 (1), Toronto, Canada, 2005. Keyword(s): Diffusion, brainvisa, IFR49. [bibtex-entry]


  6. V. El Kouby, Y. Cointepas, C. Poupon, D. Rivière, N. Golestani, J.-B. Poline, D. Le Bihan, and J.-F. Mangin. MR Diffusion-Based Inference of a Fiber Bundle Model from a Population of Subjects. In MICCAI'05, pages 196-204, 2005. Keyword(s): Diffusion, LongConfPaper, brainvisa, IFR49. [bibtex-entry]


2004

  1. C. Clouchoux, O. Coulon, A. Cachia, D. Rivière, J.-F. Mangin, and J. Régis. Towards an anatomically meaningful parameterization of the cortical surface. In MICCAI, volume 3216 of Lecture Notes in Computer Science, St-Malo, France, pages 1046-1047, 2004. Springer-Verlag. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  2. L. Liu, D. Meier, M. Polgar-Turcsanyi, P. Karkocha, R. Bakshi, and C. Guttmann. Event-driven workflow management for medical image processing and analysis in a large image database. In Proc. of DiDaMIC Workshop (MICCAI), 2004. Keyword(s): brainvisa. [bibtex-entry]


  3. A. Roche, P.-J. Lahaye, and J.-B. Poline. Incremental Activation Detection in fMRI Series using Kalman Filtering. In Proc. 2st Proc. IEEE ISBI, Arlington, VA, pages 376-379, Apr. 2004. Keyword(s): fMRI, brainvisa, IFR49. [bibtex-entry]


2003

  1. Y. Cointepas, C. Poupon, R. Maroy, D. Rivière, D. Le Bihan, and J.-F. Mangin. A freely available Anatomist/BrainVISA package for analysis of diffusion MR images. In Proc. 9th HBM CD-Rom Neuroimage vol 19 (2), New York,, June19--22 2003. Keyword(s): brainvisa, IFR49. [bibtex-entry]


  2. D. Rivière, J. Régis, Y. Cointepas, D. Papadopoulos-Orfanos, A. Cachia, and J.-F. Mangin. A freely available Anatomist/BrainVISA package for structural morphometry of the cortical sulci. In Proc. 9th HBM, Neuroimage 19(2), New York,, pages 934, 2003. Keyword(s): brainvisa, IFR49. [bibtex-entry]



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